List of open source bioinformatics software

Software Description Resources Platform License Developer
AutoDock suite of automated docking tools Website Platform License Developer
Bioconductor R (programming language) language toolkit Website - Articles Linux, Mac OS X, Windows Artistic License 2.0 Fred Hutchinson Cancer Research Center
BioMOBY registry of web services Website - Articles Web License Open Bioinformatics Foundation
BioPerl Perl language toolkit Website Cross-platform Artistic License & GPL Open Bioinformatics Foundation
BioPHP PHP language toolkit Website Platform License Open Bioinformatics Foundation
Biopython Python language toolkit Website Cross-platform Biopython License Open Bioinformatics Foundation
BioRuby Ruby language toolkit Website Platform License Open Bioinformatics Foundation
caCORE ontologic representation environment Website - Articles Platform License National Cancer Institute
caArray ontologic representation environment [1] - [2] Platform License National Cancer Institute
Integrated Genome Browser Java-based desktop genome browser Website Linux, Mac OS X, Windows CPL 1.0 GenoViz
IntAct molecular interaction database Website - Articles Platform License European Bioinformatics Institute
Java Treeview microarray data viewer Website - Articles Cross-platform License Developer
LabKey Server platform for integrating, analyzing and sharing data Website Linux, Mac OS X, Windows Apache License LabKey Software Foundation
UGENE integrated bioinformatics tools Website - Podcast Linux, Mac OS X, Windows GPL2 License Unipro
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